J3_8CF1_008

3D structure

PDB id

8CF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline bound to the 30S head

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8CF1|1|A|U|1212, 8CF1|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CF1_008 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1014

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8CF1|1|A|C|990
8CF1|1|A|U|991
8CF1|1|A|U|992
8CF1|1|A|G|993
8CF1|1|A|A|994
8CF1|1|A|C|995
8CF1|1|A|A|996
8CF1|1|A|U|997
*
8CF1|1|A|A|1044
8CF1|1|A|C|1045
8CF1|1|A|A|1046
8CF1|1|A|G|1047
*
8CF1|1|A|C|1210
8CF1|1|A|U|1211
8CF1|1|A|U|1212
8CF1|1|A|A|1213
8CF1|1|A|C|1214
8CF1|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14