J3_8CF5_009

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GUC*GCCUAUCGAUCCU*A(OMG)GUGCC

Length

23 nucleotides

Bulged bases

8CF5|1|AA|C|2797

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CF5|1|AA|G|2651
8CF5|1|AA|U|2652
8CF5|1|AA|C|2653
*
8CF5|1|AA|G|2754
8CF5|1|AA|C|2755
8CF5|1|AA|C|2756
8CF5|1|AA|U|2757
8CF5|1|AA|A|2758
8CF5|1|AA|U|2759
8CF5|1|AA|C|2760
8CF5|1|AA|G|2761
8CF5|1|AA|A|2762
8CF5|1|AA|U|2763
8CF5|1|AA|C|2764
8CF5|1|AA|C|2765
8CF5|1|AA|U|2766
*
8CF5|1|AA|A|2792
8CF5|1|AA|OMG|2793
8CF5|1|AA|G|2794
8CF5|1|AA|U|2795
8CF5|1|AA|G|2796
8CF5|1|AA|C|2797
8CF5|1|AA|C|2798

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain Cc

Transfer RNA; tRNA

Chain F

60S ribosomal protein L21-A

Chain M

60S ribosomal protein L28

Chain a

60S ribosomal protein L42-A