3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
Length
30 nucleotides
Bulged bases
8CF5|1|AA|A|3172, 8CF5|1|AA|G|3173, 8CF5|1|AA|A|3215, 8CF5|1|AA|G|3216, 8CF5|1|AA|G|3219, 8CF5|1|AA|A|3268, 8CF5|1|AA|U|3270, 8CF5|1|AA|C|3272, 8CF5|1|AA|U|3275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CF5_036 not in the Motif Atlas
Homologous match to J3_8P9A_064
Geometric discrepancy: 0.2031
The information below is about J3_8P9A_064
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_03190.1
Basepair signature
cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
Number of instances in this motif group
1

Unit IDs

8CF5|1|AA|U|3171
8CF5|1|AA|A|3172
8CF5|1|AA|G|3173
8CF5|1|AA|A|3174
8CF5|1|AA|U|3175
8CF5|1|AA|G|3176
*
8CF5|1|AA|C|3212
8CF5|1|AA|A|3213
8CF5|1|AA|U|3214
8CF5|1|AA|A|3215
8CF5|1|AA|G|3216
8CF5|1|AA|C|3217
8CF5|1|AA|A|3218
8CF5|1|AA|G|3219
8CF5|1|AA|G|3220
*
8CF5|1|AA|C|3265
8CF5|1|AA|G|3266
8CF5|1|AA|A|3267
8CF5|1|AA|A|3268
8CF5|1|AA|U|3269
8CF5|1|AA|U|3270
8CF5|1|AA|G|3271
8CF5|1|AA|C|3272
8CF5|1|AA|A|3273
8CF5|1|AA|A|3274
8CF5|1|AA|U|3275
8CF5|1|AA|G|3276
8CF5|1|AA|U|3277
8CF5|1|AA|C|3278
8CF5|1|AA|A|3279

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain A
60S ribosomal protein L16-A
Chain II
60S ribosomal protein L6-A
Chain PP
60S ribosomal protein L14-A
Chain R
60S ribosomal protein L33-A

Coloring options:


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