3D structure

PDB id
8CF8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eravacycline bound to the 30S head
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CF8_004 not in the Motif Atlas
Homologous match to J3_5J7L_007
Geometric discrepancy: 0.1138
The information below is about J3_5J7L_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

8CF8|1|A|C|990
8CF8|1|A|U|991
8CF8|1|A|U|992
8CF8|1|A|G|993
*
8CF8|1|A|C|1045
8CF8|1|A|A|1046
8CF8|1|A|G|1047
*
8CF8|1|A|C|1210
8CF8|1|A|U|1211
8CF8|1|A|U|1212
8CF8|1|A|A|1213
8CF8|1|A|C|1214
8CF8|1|A|G|1215

Current chains

Chain A
16S rRNA

Nearby chains

Chain N
Small ribosomal subunit protein uS14

Coloring options:


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