J3_8CF8_004
3D structure
- PDB id
- 8CF8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eravacycline bound to the 30S head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CF8_004 not in the Motif Atlas
- Homologous match to J3_5J7L_007
- Geometric discrepancy: 0.1138
- The information below is about J3_5J7L_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82572.1
- Basepair signature
- cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CF8|1|A|C|990
8CF8|1|A|U|991
8CF8|1|A|U|992
8CF8|1|A|G|993
*
8CF8|1|A|C|1045
8CF8|1|A|A|1046
8CF8|1|A|G|1047
*
8CF8|1|A|C|1210
8CF8|1|A|U|1211
8CF8|1|A|U|1212
8CF8|1|A|A|1213
8CF8|1|A|C|1214
8CF8|1|A|G|1215
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain N
- Small ribosomal subunit protein uS14
Coloring options: