J3_8CG8_031
3D structure
- PDB id
- 8CG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGG*CACCAU
- Length
- 23 nucleotides
- Bulged bases
- 8CG8|1|AA|C|1556, 8CG8|1|AA|A|1558, 8CG8|1|AA|A|1580, 8CG8|1|AA|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CG8|1|AA|A|1537
8CG8|1|AA|G|1538
8CG8|1|AA|A|1539
8CG8|1|AA|U|1540
8CG8|1|AA|G|1541
8CG8|1|AA|G|1542
*
8CG8|1|AA|C|1551
8CG8|1|AA|G|1552
8CG8|1|AA|U|1553
8CG8|1|AA|U|1554
8CG8|1|AA|U|1555
8CG8|1|AA|C|1556
8CG8|1|AA|A|1557
8CG8|1|AA|A|1558
8CG8|1|AA|A|1559
8CG8|1|AA|G|1560
8CG8|1|AA|G|1561
*
8CG8|1|AA|C|1579
8CG8|1|AA|A|1580
8CG8|1|AA|C|1581
8CG8|1|AA|C|1582
8CG8|1|AA|A|1583
8CG8|1|AA|U|1584
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain J
- 60S ribosomal protein L25
- Chain KK
- 60S ribosomal protein L8-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain V
- 60S ribosomal protein L37-A
Coloring options: