Loop J3_8CG8

3D structure

PDB id: 8CG8 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å

Loop

Sequence: CCAGACACAAUAAGGAUUG*CUUGAUUUUGUGGGUG*UUAGACG
Length: 42 nucleotides
Bulged bases: 8CG8|1|c|A|1217, 8CG8|1|c|A|1226, 8CG8|1|c|A|1227, 8CG8|1|c|G|1228, 8CG8|1|c|U|1257, 8CG8|1|c|G|1445, 8CG8|1|c|C|1447
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8CG8|1|c|C|1215
8CG8|1|c|C|1216
8CG8|1|c|A|1217
8CG8|1|c|G|1218
8CG8|1|c|A|1219
8CG8|1|c|C|1220
8CG8|1|c|A|1221
8CG8|1|c|C|1222
8CG8|1|c|A|1223
8CG8|1|c|A|1224
8CG8|1|c|U|1225
8CG8|1|c|A|1226
8CG8|1|c|A|1227
8CG8|1|c|G|1228
8CG8|1|c|G|1229
8CG8|1|c|A|1230
8CG8|1|c|U|1231
8CG8|1|c|U|1232
8CG8|1|c|G|1233
*
8CG8|1|c|C|1252
8CG8|1|c|U|1253
8CG8|1|c|U|1254
8CG8|1|c|G|1255
8CG8|1|c|A|1256
8CG8|1|c|U|1257
8CG8|1|c|U|1258
8CG8|1|c|U|1259
8CG8|1|c|U|1260
8CG8|1|c|G|1261
8CG8|1|c|U|1262
8CG8|1|c|G|1263
8CG8|1|c|G|1264
8CG8|1|c|G|1265
8CG8|1|c|U|1266
8CG8|1|c|G|1267
*
8CG8|1|c|U|1442
8CG8|1|c|U|1443
8CG8|1|c|A|1444
8CG8|1|c|G|1445
8CG8|1|c|A|1446
8CG8|1|c|C|1447
8CG8|1|c|G|1448

Current chains

Chain c: 18S ribosomal RNA

Nearby chains

Chain 5: HLJ1_G0030400.mRNA.1.CDS.1
Chain 8: Ubiquitin-40S ribosomal protein S31
Chain Aa: Elongation factor 2
Chain n: 40S ribosomal protein S10-A

J3_8CG8_041