J3_8CGD_007

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8CGD|1|a|A|2518, 8CGD|1|a|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGD_007 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0458

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8CGD|1|a|C|2517
8CGD|1|a|A|2518
8CGD|1|a|U|2519
8CGD|1|a|C|2520
*
8CGD|1|a|G|2545
8CGD|1|a|U|2546
8CGD|1|a|A|2547
*
8CGD|1|a|U|2561
8CGD|1|a|U|2562
8CGD|1|a|U|2563
8CGD|1|a|A|2564
8CGD|1|a|A|2565
8CGD|1|a|A|2566
8CGD|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13

Chain j

Large ribosomal subunit protein uL14