J3_8CGD_017
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8CGD|1|a|A|2388, 8CGD|1|a|U|2390, 8CGD|1|a|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CGD_017 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0668
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8CGD|1|a|G|2282
8CGD|1|a|C|2283
8CGD|1|a|A|2284
*
8CGD|1|a|U|2384
8CGD|1|a|C|2385
8CGD|1|a|A|2386
8CGD|1|a|U|2387
8CGD|1|a|A|2388
8CGD|1|a|G|2389
8CGD|1|a|U|2390
8CGD|1|a|G|2391
8CGD|1|a|A|2392
8CGD|1|a|U|2393
8CGD|1|a|C|2394
8CGD|1|a|C|2395
*
8CGD|1|a|G|2421
8CGD|1|a|C|2422
8CGD|1|a|U|2423
8CGD|1|a|C|2424
8CGD|1|a|A|2425
8CGD|1|a|A|2426
8CGD|1|a|C|2427
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL33
- Chain 2
- Large ribosomal subunit protein bL35
- Chain k
- 50S ribosomal protein L15
- Chain v
- Large ribosomal subunit protein bL27
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