J3_8CGI_009

3D structure

PDB id

8CGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pentacycline TP038 bound to the 30S head

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8CGI|1|A|U|1212, 8CGI|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGI_009 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.0976

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8CGI|1|A|C|990
8CGI|1|A|U|991
8CGI|1|A|U|992
8CGI|1|A|G|993
8CGI|1|A|A|994
8CGI|1|A|C|995
8CGI|1|A|A|996
8CGI|1|A|U|997
*
8CGI|1|A|A|1044
8CGI|1|A|C|1045
8CGI|1|A|A|1046
8CGI|1|A|G|1047
*
8CGI|1|A|C|1210
8CGI|1|A|U|1211
8CGI|1|A|U|1212
8CGI|1|A|A|1213
8CGI|1|A|C|1214
8CGI|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14