J3_8CGJ_007

3D structure

PDB id

8CGJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.79 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGJ_007 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1447

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8CGJ|1|A|U|1073
8CGJ|1|A|G|1074
*
8CGJ|1|A|U|1083
8CGJ|1|A|G|1084
8CGJ|1|A|U|1085
8CGJ|1|A|U|1086
8CGJ|1|A|G|1087
*
8CGJ|1|A|C|1098
8CGJ|1|A|G|1099
8CGJ|1|A|C|1100
8CGJ|1|A|A|1101
8CGJ|1|A|A|1102

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain E

Small ribosomal subunit protein uS5