J3_8CGK_013

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8CGK|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGK_013 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0319

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8CGK|1|a|G|297
8CGK|1|a|G|298
8CGK|1|a|A|299
8CGK|1|a|A|300
8CGK|1|a|G|301
*
8CGK|1|a|C|316
8CGK|1|a|G|317
8CGK|1|a|C|318
8CGK|1|a|G|319
8CGK|1|a|A|320
8CGK|1|a|U|321
8CGK|1|a|A|322
8CGK|1|a|C|323
8CGK|1|a|A|324
8CGK|1|a|G|325
*
8CGK|1|a|C|337
8CGK|1|a|G|338
8CGK|1|a|U|339
8CGK|1|a|A|340
8CGK|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24