J3_8CGN_003

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

UAG*CGUA(OMG)C*GUCGA

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGN|1|AA|U|829
8CGN|1|AA|A|830
8CGN|1|AA|G|831
*
8CGN|1|AA|C|863
8CGN|1|AA|G|864
8CGN|1|AA|U|865
8CGN|1|AA|A|866
8CGN|1|AA|OMG|867
8CGN|1|AA|C|868
*
8CGN|1|AA|G|891
8CGN|1|AA|U|892
8CGN|1|AA|C|893
8CGN|1|AA|G|894
8CGN|1|AA|A|895

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain EE

60S ribosomal protein L2-A

Chain S

60S ribosomal protein L34-A

Chain V

60S ribosomal protein L37-A