J3_8CGN_009

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GUC*GCCUAUCGAUCCU*A(OMG)GUGCC

Length

23 nucleotides

Bulged bases

8CGN|1|AA|C|2797

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGN|1|AA|G|2651
8CGN|1|AA|U|2652
8CGN|1|AA|C|2653
*
8CGN|1|AA|G|2754
8CGN|1|AA|C|2755
8CGN|1|AA|C|2756
8CGN|1|AA|U|2757
8CGN|1|AA|A|2758
8CGN|1|AA|U|2759
8CGN|1|AA|C|2760
8CGN|1|AA|G|2761
8CGN|1|AA|A|2762
8CGN|1|AA|U|2763
8CGN|1|AA|C|2764
8CGN|1|AA|C|2765
8CGN|1|AA|U|2766
*
8CGN|1|AA|A|2792
8CGN|1|AA|OMG|2793
8CGN|1|AA|G|2794
8CGN|1|AA|U|2795
8CGN|1|AA|G|2796
8CGN|1|AA|C|2797
8CGN|1|AA|C|2798

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain Cc

Transfer RNA; tRNA

Chain F

60S ribosomal protein L21-A

Chain M

60S ribosomal protein L28

Chain a

60S ribosomal protein L42-A