3D structure

PDB id
8CGU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Gentamicin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
1.89 Å

Loop

Sequence
GC*GGAAUAU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CGU_002 not in the Motif Atlas
Geometric match to J3_5J7L_001
Geometric discrepancy: 0.0453
The information below is about J3_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.4
Basepair signature
cWW-cWW-cSW-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8CGU|1|A|G|46
8CGU|1|A|C|47
*
8CGU|1|A|G|361
8CGU|1|A|G|362
8CGU|1|A|A|363
8CGU|1|A|A|364
8CGU|1|A|U|365
8CGU|1|A|A|366
8CGU|1|A|U|367
*
8CGU|1|A|A|393
8CGU|1|A|G|394
8CGU|1|A|C|395

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
Small ribosomal subunit protein uS12
Chain P
30S ribosomal protein S16

Coloring options:


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