J3_8CGV_001

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8CGV|1|a|U|686, 8CGV|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGV_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0488

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8CGV|1|a|U|683
8CGV|1|a|G|684
8CGV|1|a|A|685
8CGV|1|a|U|686
8CGV|1|a|C|687
8CGV|1|a|U|688
8CGV|1|a|A|689
*
8CGV|1|a|U|773
8CGV|1|a|G|774
8CGV|1|a|G|775
*
8CGV|1|a|C|791
8CGV|1|a|A|792
8CGV|1|a|A|793
8CGV|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2

Chain e

Large ribosomal subunit protein uL4