3D structure

PDB id
8CGV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tiamulin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.66 Å

Loop

Sequence
AC*GAUAAGC*GAUUU
Length
14 nucleotides
Bulged bases
8CGV|1|a|U|72, 8CGV|1|a|A|74
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CGV_013 not in the Motif Atlas
Homologous match to J3_5J7L_037
Geometric discrepancy: 0.0366
The information below is about J3_5J7L_037
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_35667.2
Basepair signature
cWW-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

8CGV|1|a|A|56
8CGV|1|a|C|57
*
8CGV|1|a|G|70
8CGV|1|a|A|71
8CGV|1|a|U|72
8CGV|1|a|A|73
8CGV|1|a|A|74
8CGV|1|a|G|75
8CGV|1|a|C|76
*
8CGV|1|a|G|110
8CGV|1|a|A|111
8CGV|1|a|U|112
8CGV|1|a|U|113
8CGV|1|a|U|114

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
Large ribosomal subunit protein bL34
Chain s
Large ribosomal subunit protein uL23
Chain x
Large ribosomal subunit protein uL29

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