J3_8CGV_014

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8CGV|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGV_014 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0339

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8CGV|1|a|G|297
8CGV|1|a|G|298
8CGV|1|a|A|299
8CGV|1|a|A|300
8CGV|1|a|G|301
*
8CGV|1|a|C|316
8CGV|1|a|G|317
8CGV|1|a|C|318
8CGV|1|a|G|319
8CGV|1|a|A|320
8CGV|1|a|U|321
8CGV|1|a|A|322
8CGV|1|a|C|323
8CGV|1|a|A|324
8CGV|1|a|G|325
*
8CGV|1|a|C|337
8CGV|1|a|G|338
8CGV|1|a|U|339
8CGV|1|a|A|340
8CGV|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24