J3_8CGV_015

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGV_015 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.0627

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8CGV|1|a|U|1344
8CGV|1|a|C|1345
8CGV|1|a|G|1346
8CGV|1|a|A|1347
8CGV|1|a|C|1348
8CGV|1|a|C|1349
*
8CGV|1|a|G|1382
8CGV|1|a|A|1383
8CGV|1|a|A|1384
8CGV|1|a|A|1385
*
8CGV|1|a|U|1402
8CGV|1|a|A|1403

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23