J3_8CRE_007

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAC*GGG*CAUAAU

Length

13 nucleotides

Bulged bases

8CRE|1|1|U|618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28315.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8CRE|1|1|A|436
8CRE|1|1|G|437
8CRE|1|1|A|438
8CRE|1|1|C|439
*
8CRE|1|1|G|488
8CRE|1|1|G|489
8CRE|1|1|G|490
*
8CRE|1|1|C|616
8CRE|1|1|A|617
8CRE|1|1|U|618
8CRE|1|1|A|619
8CRE|1|1|A|620
8CRE|1|1|U|621

Current chains

Chain 1

25S

Nearby chains

Chain AF

60S ribosomal protein L32

Chain AG

60S ribosomal protein L33-A

Chain x

Ribosomal protein L22