J3_8CRE_008

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UC*GAGGACUGCG*CUAGGA

Length

18 nucleotides

Bulged bases

8CRE|1|1|U|605

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83726.1

Basepair signature

cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8CRE|1|1|U|497
8CRE|1|1|C|498
*
8CRE|1|1|G|586
8CRE|1|1|A|587
8CRE|1|1|G|588
8CRE|1|1|G|589
8CRE|1|1|A|590
8CRE|1|1|C|591
8CRE|1|1|U|592
8CRE|1|1|G|593
8CRE|1|1|C|594
8CRE|1|1|G|595
*
8CRE|1|1|C|604
8CRE|1|1|U|605
8CRE|1|1|A|606
8CRE|1|1|G|607
8CRE|1|1|G|608
8CRE|1|1|A|609

Current chains

Chain 1

25S

Nearby chains

Chain AF

60S ribosomal protein L32

Chain l

60S ribosomal protein L4-B

Chain n

60S ribosomal protein L6

Chain o

60S ribosomal protein L7-A