J3_8CRE_015

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCGAUC*GGAAU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

8CRE|1|1|U|1522
8CRE|1|1|C|1523
8CRE|1|1|G|1524
8CRE|1|1|A|1525
8CRE|1|1|U|1526
8CRE|1|1|C|1527
*
8CRE|1|1|G|1587
8CRE|1|1|G|1588
8CRE|1|1|A|1589
8CRE|1|1|A|1590
8CRE|1|1|U|1591
*
8CRE|1|1|A|1608
8CRE|1|1|A|1609

Current chains

Chain 1

25S

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 8

60S ribosomal protein L25

Chain AH

60S ribosomal protein L34-B

Chain AL

60S ribosomal protein L38

Chain AM

60S ribosomal protein L39