J3_8CRE_019

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUG*CUUAUU*AAGACAUU

Length

18 nucleotides

Bulged bases

8CRE|1|1|U|2492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84052.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8CRE|1|1|A|2410
8CRE|1|1|U|2411
8CRE|1|1|U|2412
8CRE|1|1|G|2413
*
8CRE|1|1|C|2490
8CRE|1|1|U|2491
8CRE|1|1|U|2492
8CRE|1|1|A|2493
8CRE|1|1|U|2494
8CRE|1|1|U|2495
*
8CRE|1|1|A|2562
8CRE|1|1|A|2563
8CRE|1|1|G|2564
8CRE|1|1|A|2565
8CRE|1|1|C|2566
8CRE|1|1|A|2567
8CRE|1|1|U|2568
8CRE|1|1|U|2569

Current chains

Chain 1

25S

Nearby chains

Chain AJ

60S ribosomal protein L36

Chain j

60S ribosomal protein L2-B

Chain p

60S ribosomal protein L8

Chain v

60S ribosomal protein L15-A