J3_8CRE_020
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUAAG*CGAU
- Length
- 24 nucleotides
- Bulged bases
- 8CRE|1|1|G|2527, 8CRE|1|1|U|2528, 8CRE|1|1|U|2529, 8CRE|1|1|C|2530, 8CRE|1|1|U|2531, 8CRE|1|1|A|2532
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8CRE|1|1|A|2507
8CRE|1|1|G|2508
8CRE|1|1|C|2509
8CRE|1|1|U|2510
*
8CRE|1|1|A|2525
8CRE|1|1|C|2526
8CRE|1|1|G|2527
8CRE|1|1|U|2528
8CRE|1|1|U|2529
8CRE|1|1|C|2530
8CRE|1|1|U|2531
8CRE|1|1|A|2532
8CRE|1|1|G|2533
8CRE|1|1|C|2534
8CRE|1|1|A|2535
8CRE|1|1|U|2536
8CRE|1|1|U|2537
8CRE|1|1|A|2538
8CRE|1|1|A|2539
8CRE|1|1|G|2540
*
8CRE|1|1|C|2550
8CRE|1|1|G|2551
8CRE|1|1|A|2552
8CRE|1|1|U|2553
Current chains
- Chain 1
- 25S
Nearby chains
- Chain AA
- 60S ribosomal protein L27
- Chain AD
- 60S ribosomal protein L30
- Chain AH
- 60S ribosomal protein L34-B
- Chain AQ
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-B
- Chain p
- 60S ribosomal protein L8
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