J3_8CRE_027

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AC*GAUACGU*AAUCU

Length

14 nucleotides

Bulged bases

8CRE|1|4|U|60, 8CRE|1|4|C|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8CRE|1|4|A|44
8CRE|1|4|C|45
*
8CRE|1|4|G|58
8CRE|1|4|A|59
8CRE|1|4|U|60
8CRE|1|4|A|61
8CRE|1|4|C|62
8CRE|1|4|G|63
8CRE|1|4|U|64
*
8CRE|1|4|A|96
8CRE|1|4|A|97
8CRE|1|4|U|98
8CRE|1|4|C|99
8CRE|1|4|U|100

Current chains

Chain 4

5.8S

Nearby chains

Chain 8

60S ribosomal protein L25

Chain AI

Ribosomal protein L29

Chain AK

60S ribosomal protein L37-B

Chain AM

60S ribosomal protein L39