3D structure

PDB id
8CRE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUUUAGAUG*CAUAGCAGG*CGGAUAGCAAUGUCAACA
Length
36 nucleotides
Bulged bases
8CRE|1|AS|A|3142, 8CRE|1|AS|G|3143, 8CRE|1|AS|A|3180, 8CRE|1|AS|G|3181, 8CRE|1|AS|G|3184, 8CRE|1|AS|A|3233, 8CRE|1|AS|A|3235, 8CRE|1|AS|C|3237
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8CRE|1|AS|U|3138
8CRE|1|AS|U|3139
8CRE|1|AS|U|3140
8CRE|1|AS|U|3141
8CRE|1|AS|A|3142
8CRE|1|AS|G|3143
8CRE|1|AS|A|3144
8CRE|1|AS|U|3145
8CRE|1|AS|G|3146
*
8CRE|1|AS|C|3177
8CRE|1|AS|A|3178
8CRE|1|AS|U|3179
8CRE|1|AS|A|3180
8CRE|1|AS|G|3181
8CRE|1|AS|C|3182
8CRE|1|AS|A|3183
8CRE|1|AS|G|3184
8CRE|1|AS|G|3185
*
8CRE|1|AS|C|3230
8CRE|1|AS|G|3231
8CRE|1|AS|G|3232
8CRE|1|AS|A|3233
8CRE|1|AS|U|3234
8CRE|1|AS|A|3235
8CRE|1|AS|G|3236
8CRE|1|AS|C|3237
8CRE|1|AS|A|3238
8CRE|1|AS|A|3239
8CRE|1|AS|U|3240
8CRE|1|AS|G|3241
8CRE|1|AS|U|3242
8CRE|1|AS|C|3243
8CRE|1|AS|A|3244
8CRE|1|AS|A|3245
8CRE|1|AS|C|3246
8CRE|1|AS|A|3247

Current chains

Chain AS
25S

Nearby chains

Chain BA
60S ribosomal protein L6
Chain BH
60S ribosomal protein L14-B
Chain BJ
Ribosomal protein L13
Chain BK
Ribosomal protein L22
Chain CA
60S ribosomal protein L33-A

Coloring options:

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