J3_8CRE_064
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8CRE|1|B|G|1184, 8CRE|1|B|G|1186, 8CRE|1|B|A|1188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CRE_064 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0325
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CRE|1|B|C|1165
8CRE|1|B|U|1166
8CRE|1|B|U|1167
8CRE|1|B|A|1168
8CRE|1|B|A|1169
8CRE|1|B|U|1170
8CRE|1|B|U|1171
8CRE|1|B|U|1172
*
8CRE|1|B|G|1183
8CRE|1|B|G|1184
8CRE|1|B|G|1185
8CRE|1|B|G|1186
8CRE|1|B|A|1187
8CRE|1|B|A|1188
8CRE|1|B|A|1189
8CRE|1|B|C|1190
8CRE|1|B|U|1191
8CRE|1|B|C|1192
8CRE|1|B|A|1193
8CRE|1|B|C|1194
*
8CRE|1|B|G|1440
8CRE|1|B|G|1441
8CRE|1|B|C|1442
8CRE|1|B|C|1443
8CRE|1|B|G|1444
Current chains
- Chain B
- 18S
Nearby chains
- Chain R
- 40S ribosomal protein S15
- Chain U
- 40S ribosomal protein S18-B
- Chain W
- Ribosomal protein S10
- Chain f
- 40S ribosomal protein S29A
- Chain h
- Ubiquitin-40S ribosomal protein S31 fusion protein
- Chain i
- 60S ribosomal protein CAALFM_C304810CA
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