3D structure

PDB id
8CRE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CUA*UUACG*CAAAG
Length
13 nucleotides
Bulged bases
8CRE|1|CM|A|1078
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_94999.1
Basepair signature
cWW-tWW-cWW-tWW-cWW-F-F
Number of instances in this motif group
2

Unit IDs

8CRE|1|CM|C|1022
8CRE|1|CM|U|1023
8CRE|1|CM|A|1024
*
8CRE|1|CM|U|1064
8CRE|1|CM|U|1065
8CRE|1|CM|A|1066
8CRE|1|CM|C|1067
8CRE|1|CM|G|1068
*
8CRE|1|CM|C|1075
8CRE|1|CM|A|1076
8CRE|1|CM|A|1077
8CRE|1|CM|A|1078
8CRE|1|CM|G|1079

Current chains

Chain CM
18S

Nearby chains

Chain CN
40S ribosomal protein S0
Chain CP
Ribosomal protein S5
Chain DI
40S ribosomal protein S21
Chain DJ
40S ribosomal protein S22-A
Chain DN
40S ribosomal protein S26
Chain DO
40S ribosomal protein S27

Coloring options:

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