J3_8CRE_078

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8CRE|1|CM|C|1146
8CRE|1|CM|C|1147
8CRE|1|CM|A|1148
8CRE|1|CM|G|1149
*
8CRE|1|CM|C|1568
8CRE|1|CM|U|1569
8CRE|1|CM|A|1570
8CRE|1|CM|G|1571
8CRE|1|CM|U|1572
8CRE|1|CM|A|1573
8CRE|1|CM|A|1574
*
8CRE|1|CM|U|1596
8CRE|1|CM|G|1597
8CRE|1|CM|A|1598
8CRE|1|CM|U|1599
8CRE|1|CM|U|1600
8CRE|1|CM|A|1601
8CRE|1|CM|C|1602
8CRE|1|CM|G|1603

Current chains

Chain CM

18S

Nearby chains

Chain CS

Ribosomal protein S7

Chain DD

40S ribosomal protein S16

Chain DP

40S ribosomal protein S28-B