J3_8CRE_081

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8CRE|1|CM|A|1202, 8CRE|1|CM|G|1431, 8CRE|1|CM|C|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_87797.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8CRE|1|CM|C|1200
8CRE|1|CM|C|1201
8CRE|1|CM|A|1202
8CRE|1|CM|G|1203
8CRE|1|CM|A|1204
8CRE|1|CM|C|1205
*
8CRE|1|CM|G|1248
8CRE|1|CM|G|1249
8CRE|1|CM|G|1250
8CRE|1|CM|U|1251
8CRE|1|CM|G|1252
*
8CRE|1|CM|U|1428
8CRE|1|CM|U|1429
8CRE|1|CM|A|1430
8CRE|1|CM|G|1431
8CRE|1|CM|A|1432
8CRE|1|CM|C|1433
8CRE|1|CM|G|1434

Current chains

Chain CM

18S

Nearby chains

Chain CX

40S ribosomal protein S10-A

Chain DQ

40S ribosomal protein S29A

Chain DS

Ubiquitin-40S ribosomal protein S31 fusion protein