J3_8CRE_086

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

8CRE|1|CM|U|1459, 8CRE|1|CM|G|1526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8CRE|1|CM|C|1456
8CRE|1|CM|A|1457
8CRE|1|CM|C|1458
8CRE|1|CM|U|1459
8CRE|1|CM|G|1460
*
8CRE|1|CM|C|1520
8CRE|1|CM|G|1521
8CRE|1|CM|U|1522
8CRE|1|CM|G|1523
8CRE|1|CM|C|1524
8CRE|1|CM|U|1525
8CRE|1|CM|G|1526
8CRE|1|CM|G|1527
*
8CRE|1|CM|C|1558
8CRE|1|CM|G|1559
8CRE|1|CM|A|1560
8CRE|1|CM|G|1561

Current chains

Chain CM

18S

Nearby chains

Chain CS

Ribosomal protein S7

Chain DF

40S ribosomal protein S18-B

Chain DG

40S ribosomal protein S19-A

Chain DM

40S ribosomal protein S25