J3_8CVJ_047

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

8CVJ|1|2a|A|975, 8CVJ|1|2a|G|976, 8CVJ|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVJ_047 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0741

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8CVJ|1|2a|U|955
8CVJ|1|2a|U|956
8CVJ|1|2a|U|957
8CVJ|1|2a|A|958
8CVJ|1|2a|A|959
8CVJ|1|2a|U|960
8CVJ|1|2a|U|961
8CVJ|1|2a|C|962
*
8CVJ|1|2a|G|973
8CVJ|1|2a|A|974
8CVJ|1|2a|A|975
8CVJ|1|2a|G|976
8CVJ|1|2a|A|977
8CVJ|1|2a|A|978
8CVJ|1|2a|C|979
8CVJ|1|2a|C|980
8CVJ|1|2a|U|981
8CVJ|1|2a|U|982
8CVJ|1|2a|A|983
8CVJ|1|2a|C|984
*
8CVJ|1|2a|G|1221
8CVJ|1|2a|G|1222
8CVJ|1|2a|C|1223
8CVJ|1|2a|G|1224
8CVJ|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2w

Transfer RNA; tRNA