J3_8CVJ_048

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCUUG*CAG*CUUACGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVJ|1|2a|C|989
8CVJ|1|2a|C|990
8CVJ|1|2a|U|991
8CVJ|1|2a|U|992
8CVJ|1|2a|G|993
*
8CVJ|1|2a|C|1045
8CVJ|1|2a|A|1046
8CVJ|1|2a|G|1047
*
8CVJ|1|2a|C|1210
8CVJ|1|2a|U|1211
8CVJ|1|2a|U|1212
8CVJ|1|2a|A|1213
8CVJ|1|2a|C|1214
8CVJ|1|2a|G|1215
8CVJ|1|2a|G|1216

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z