J3_8CVK_050

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAAC*GGUGCCCC*GGGGAGCC

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVK|1|2a|G|1002
8CVK|1|2a|G|1003
8CVK|1|2a|A|1004
8CVK|1|2a|A|1005
8CVK|1|2a|C|1006
*
8CVK|1|2a|G|1023
8CVK|1|2a|G|1024
8CVK|1|2a|U|1025
8CVK|1|2a|G|1026
8CVK|1|2a|C|1027
8CVK|1|2a|C|1028
8CVK|1|2a|C|1029
8CVK|1|2a|C|1030
*
8CVK|1|2a|G|1031
8CVK|1|2a|G|1032
8CVK|1|2a|G|1033
8CVK|1|2a|G|1034
8CVK|1|2a|A|1035
8CVK|1|2a|G|1036
8CVK|1|2a|C|1037
8CVK|1|2a|C|1038

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains