J3_8CVK_058

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAG*CUUUAAAGAGUG*CUCAC

Length

21 nucleotides

Bulged bases

8CVK|1|1A|U|1081, 8CVK|1|1A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVK|1|1A|G|1055
8CVK|1|1A|G|1056
8CVK|1|1A|A|1057
8CVK|1|1A|G|1058
*
8CVK|1|1A|C|1080
8CVK|1|1A|U|1081
8CVK|1|1A|U|1082
8CVK|1|1A|U|1083
8CVK|1|1A|A|1084
8CVK|1|1A|A|1085
8CVK|1|1A|A|1086
8CVK|1|1A|G|1087
8CVK|1|1A|A|1088
8CVK|1|1A|G|1089
8CVK|1|1A|U|1090
8CVK|1|1A|G|1091
*
8CVK|1|1A|C|1100
8CVK|1|1A|U|1101
8CVK|1|1A|C|1102
8CVK|1|1A|A|1103
8CVK|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36