J3_8CVL_046

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVL_046 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0793

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8CVL|1|2a|C|936
8CVL|1|2a|A|937
8CVL|1|2a|A|938
8CVL|1|2a|G|939
*
8CVL|1|2a|C|1344
8CVL|1|2a|U|1345
8CVL|1|2a|A|1346
8CVL|1|2a|G|1347
8CVL|1|2a|U|1348
8CVL|1|2a|A|1349
8CVL|1|2a|A|1350
*
8CVL|1|2a|U|1372
8CVL|1|2a|G|1373
8CVL|1|2a|A|1374
8CVL|1|2a|A|1375
8CVL|1|2a|U|1376
8CVL|1|2a|A|1377
8CVL|1|2a|C|1378
8CVL|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2y

Transfer RNA; tRNA