J3_8CVL_048

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

8CVL|1|2a|A|975, 8CVL|1|2a|G|976, 8CVL|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVL_048 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0653

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8CVL|1|2a|U|955
8CVL|1|2a|U|956
8CVL|1|2a|U|957
8CVL|1|2a|A|958
8CVL|1|2a|A|959
8CVL|1|2a|U|960
8CVL|1|2a|U|961
8CVL|1|2a|C|962
*
8CVL|1|2a|G|973
8CVL|1|2a|A|974
8CVL|1|2a|A|975
8CVL|1|2a|G|976
8CVL|1|2a|A|977
8CVL|1|2a|A|978
8CVL|1|2a|C|979
8CVL|1|2a|C|980
8CVL|1|2a|U|981
8CVL|1|2a|U|982
8CVL|1|2a|A|983
8CVL|1|2a|C|984
*
8CVL|1|2a|G|1221
8CVL|1|2a|G|1222
8CVL|1|2a|C|1223
8CVL|1|2a|G|1224
8CVL|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2w

Transfer RNA; tRNA