J3_8E30_016

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E30_016 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.0815

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8E30|1|I|U|1344
8E30|1|I|C|1345
8E30|1|I|G|1346
8E30|1|I|A|1347
8E30|1|I|C|1348
8E30|1|I|C|1349
*
8E30|1|I|G|1382
8E30|1|I|A|1383
8E30|1|I|A|1384
8E30|1|I|A|1385
*
8E30|1|I|U|1402
8E30|1|I|A|1403

Current chains

Chain I

23S ribosomal RNA

Nearby chains