J3_8E33_006

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

8E33|1|I|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E33_006 not in the Motif Atlas

Homologous match to J3_5J7L_071

Geometric discrepancy: 0.1609

The information below is about J3_5J7L_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44961.1

Basepair signature

cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F

Number of instances in this motif group

1

Unit IDs

8E33|1|I|C|2295
8E33|1|I|U|2296
8E33|1|I|A|2297
8E33|1|I|A|2298
8E33|1|I|U|2299
*
8E33|1|I|A|2317
8E33|1|I|G|2318
8E33|1|I|G|2319
8E33|1|I|U|2320
8E33|1|I|U|2321
8E33|1|I|A|2322
8E33|1|I|G|2323
*
8E33|1|I|C|2332
8E33|1|I|A|2333
8E33|1|I|U|2334
8E33|1|I|A|2335
8E33|1|I|A|2336
8E33|1|I|G|2337

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA