J3_8E33_017

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

8E33|1|I|A|2388, 8E33|1|I|U|2390, 8E33|1|I|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E33_017 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.062

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8E33|1|I|G|2282
8E33|1|I|C|2283
8E33|1|I|A|2284
*
8E33|1|I|U|2384
8E33|1|I|C|2385
8E33|1|I|A|2386
8E33|1|I|U|2387
8E33|1|I|A|2388
8E33|1|I|G|2389
8E33|1|I|U|2390
8E33|1|I|G|2391
8E33|1|I|A|2392
8E33|1|I|U|2393
8E33|1|I|C|2394
8E33|1|I|C|2395
*
8E33|1|I|G|2421
8E33|1|I|C|2422
8E33|1|I|U|2423
8E33|1|I|C|2424
8E33|1|I|A|2425
8E33|1|I|A|2426
8E33|1|I|C|2427

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15