J3_8E35_001

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8E35|1|I|U|686, 8E35|1|I|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E35_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.116

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8E35|1|I|U|683
8E35|1|I|G|684
8E35|1|I|A|685
8E35|1|I|U|686
8E35|1|I|C|687
8E35|1|I|U|688
8E35|1|I|A|689
*
8E35|1|I|U|773
8E35|1|I|G|774
8E35|1|I|G|775
*
8E35|1|I|C|791
8E35|1|I|A|792
8E35|1|I|A|793
8E35|1|I|A|794

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain R

50S ribosomal protein L34