J3_8E35_016

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CGGCCGUAG*CGCCGAUGGUAG*CGAGAGUAGGGAACUG

Length

37 nucleotides

Bulged bases

8E35|1|J|U|14, 8E35|1|J|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E35|1|J|C|8
8E35|1|J|G|9
8E35|1|J|G|10
8E35|1|J|C|11
8E35|1|J|C|12
8E35|1|J|G|13
8E35|1|J|U|14
8E35|1|J|A|15
8E35|1|J|G|16
*
8E35|1|J|C|68
8E35|1|J|G|69
8E35|1|J|C|70
8E35|1|J|C|71
8E35|1|J|G|72
8E35|1|J|A|73
8E35|1|J|U|74
8E35|1|J|G|75
8E35|1|J|G|76
8E35|1|J|U|77
8E35|1|J|A|78
8E35|1|J|G|79
*
8E35|1|J|C|97
8E35|1|J|G|98
8E35|1|J|A|99
8E35|1|J|G|100
8E35|1|J|A|101
8E35|1|J|G|102
8E35|1|J|U|103
8E35|1|J|A|104
8E35|1|J|G|105
8E35|1|J|G|106
8E35|1|J|G|107
8E35|1|J|A|108
8E35|1|J|A|109
8E35|1|J|C|110
8E35|1|J|U|111
8E35|1|J|G|112

Current chains

Chain J

5S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA