J3_8E3L_013

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8E3L|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E3L_013 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0872

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8E3L|1|I|G|297
8E3L|1|I|G|298
8E3L|1|I|A|299
8E3L|1|I|A|300
8E3L|1|I|G|301
*
8E3L|1|I|C|316
8E3L|1|I|G|317
8E3L|1|I|C|318
8E3L|1|I|G|319
8E3L|1|I|A|320
8E3L|1|I|U|321
8E3L|1|I|A|322
8E3L|1|I|C|323
8E3L|1|I|A|324
8E3L|1|I|G|325
*
8E3L|1|I|C|337
8E3L|1|I|G|338
8E3L|1|I|U|339
8E3L|1|I|A|340
8E3L|1|I|C|341

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4