J3_8E3L_015

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E3L_015 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.152

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8E3L|1|I|U|1344
8E3L|1|I|C|1345
8E3L|1|I|G|1346
8E3L|1|I|A|1347
8E3L|1|I|C|1348
8E3L|1|I|C|1349
*
8E3L|1|I|G|1382
8E3L|1|I|A|1383
8E3L|1|I|A|1384
8E3L|1|I|A|1385
*
8E3L|1|I|U|1402
8E3L|1|I|A|1403

Current chains

Chain I

50S ribosomal RNA

Nearby chains