3D structure

PDB id
8E43 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound streptogramin A analog 3336
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8E43_002 not in the Motif Atlas
Homologous match to J3_7RQB_005
Geometric discrepancy: 0.0557
The information below is about J3_7RQB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.4
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

8E43|1|I|C|698
8E43|1|I|A|699
8E43|1|I|G|700
*
8E43|1|I|C|732
8E43|1|I|G|733
8E43|1|I|A|734
8E43|1|I|A|735
8E43|1|I|C|736
*
8E43|1|I|G|760
8E43|1|I|A|761
8E43|1|I|U|762
8E43|1|I|G|763

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L2

Coloring options:


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