J3_8E43_002
3D structure
- PDB id
- 8E43 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to compound streptogramin A analog 3336
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.09 Å
Loop
- Sequence
- CAG*CGAAC*GAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8E43_002 not in the Motif Atlas
- Homologous match to J3_7RQB_005
- Geometric discrepancy: 0.0557
- The information below is about J3_7RQB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.4
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8E43|1|I|C|698
8E43|1|I|A|699
8E43|1|I|G|700
*
8E43|1|I|C|732
8E43|1|I|G|733
8E43|1|I|A|734
8E43|1|I|A|735
8E43|1|I|C|736
*
8E43|1|I|G|760
8E43|1|I|A|761
8E43|1|I|U|762
8E43|1|I|G|763
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
Coloring options: