J3_8E43_006

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

8E43|1|I|U|2334, 8E43|1|I|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E43|1|I|C|2295
8E43|1|I|U|2296
8E43|1|I|A|2297
8E43|1|I|A|2298
8E43|1|I|U|2299
*
8E43|1|I|A|2317
8E43|1|I|G|2318
8E43|1|I|G|2319
8E43|1|I|U|2320
8E43|1|I|U|2321
8E43|1|I|A|2322
8E43|1|I|G|2323
*
8E43|1|I|C|2332
8E43|1|I|A|2333
8E43|1|I|U|2334
8E43|1|I|A|2335
8E43|1|I|A|2336
8E43|1|I|G|2337

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA