3D structure

PDB id
8E43 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound streptogramin A analog 3336
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
GGAAG*CGCGAUACAG*CGUAC
Length
20 nucleotides
Bulged bases
8E43|1|I|U|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8E43_014 not in the Motif Atlas
Homologous match to J3_5J7L_068
Geometric discrepancy: 0.0535
The information below is about J3_5J7L_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

8E43|1|I|G|297
8E43|1|I|G|298
8E43|1|I|A|299
8E43|1|I|A|300
8E43|1|I|G|301
*
8E43|1|I|C|316
8E43|1|I|G|317
8E43|1|I|C|318
8E43|1|I|G|319
8E43|1|I|A|320
8E43|1|I|U|321
8E43|1|I|A|322
8E43|1|I|C|323
8E43|1|I|A|324
8E43|1|I|G|325
*
8E43|1|I|C|337
8E43|1|I|G|338
8E43|1|I|U|339
8E43|1|I|A|340
8E43|1|I|C|341

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain M
50S ribosomal protein L4

Coloring options:


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