J3_8E44_007

3D structure

PDB id

8E44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC09

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8E44|1|I|A|2518, 8E44|1|I|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E44_007 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0702

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8E44|1|I|C|2517
8E44|1|I|A|2518
8E44|1|I|U|2519
8E44|1|I|C|2520
*
8E44|1|I|G|2545
8E44|1|I|U|2546
8E44|1|I|A|2547
*
8E44|1|I|U|2561
8E44|1|I|U|2562
8E44|1|I|U|2563
8E44|1|I|A|2564
8E44|1|I|A|2565
8E44|1|I|A|2566
8E44|1|I|G|2567

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3