J3_8E44_014

3D structure

PDB id

8E44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC09

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8E44|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E44_014 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0418

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8E44|1|I|G|297
8E44|1|I|G|298
8E44|1|I|A|299
8E44|1|I|A|300
8E44|1|I|G|301
*
8E44|1|I|C|316
8E44|1|I|G|317
8E44|1|I|C|318
8E44|1|I|G|319
8E44|1|I|A|320
8E44|1|I|U|321
8E44|1|I|A|322
8E44|1|I|C|323
8E44|1|I|A|324
8E44|1|I|G|325
*
8E44|1|I|C|337
8E44|1|I|G|338
8E44|1|I|U|339
8E44|1|I|A|340
8E44|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4