J3_8E46_001

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8E46|1|I|U|686, 8E46|1|I|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8E46_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0813

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8E46|1|I|U|683
8E46|1|I|G|684
8E46|1|I|A|685
8E46|1|I|U|686
8E46|1|I|C|687
8E46|1|I|U|688
8E46|1|I|A|689
*
8E46|1|I|U|773
8E46|1|I|G|774
8E46|1|I|G|775
*
8E46|1|I|C|791
8E46|1|I|A|792
8E46|1|I|A|793
8E46|1|I|A|794

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain R

50S ribosomal protein L34