J3_8E47_018

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGCCGUAG*CGCCGAUGGUAG*CGAGAGUAGGGAACU

Length

35 nucleotides

Bulged bases

8E47|1|J|U|14, 8E47|1|J|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E47|1|J|G|9
8E47|1|J|G|10
8E47|1|J|C|11
8E47|1|J|C|12
8E47|1|J|G|13
8E47|1|J|U|14
8E47|1|J|A|15
8E47|1|J|G|16
*
8E47|1|J|C|68
8E47|1|J|G|69
8E47|1|J|C|70
8E47|1|J|C|71
8E47|1|J|G|72
8E47|1|J|A|73
8E47|1|J|U|74
8E47|1|J|G|75
8E47|1|J|G|76
8E47|1|J|U|77
8E47|1|J|A|78
8E47|1|J|G|79
*
8E47|1|J|C|97
8E47|1|J|G|98
8E47|1|J|A|99
8E47|1|J|G|100
8E47|1|J|A|101
8E47|1|J|G|102
8E47|1|J|U|103
8E47|1|J|A|104
8E47|1|J|G|105
8E47|1|J|G|106
8E47|1|J|G|107
8E47|1|J|A|108
8E47|1|J|A|109
8E47|1|J|C|110
8E47|1|J|U|111

Current chains

Chain J

5S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA